PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075339.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28258.5 Da    PI: 9.1273
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr g++KKA+EL vLCda+vaviifs tgklye++s
  XP_011075339.1  9 KKIENVNSRQVTFSKRRGGLMKKAKELAVLCDAQVAVIIFSGTGKLYEFAS 59
                    68***********************************************86 PP
2K-box68.71.9e-238517312100
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     a++ + + e++ Lk+eie Lq  +R+++G++Le L+++eL++LeqqL +++ +++++K+++lleq+e+++ +ek++ ++n+ L +k+ee
  XP_011075339.1  85 ADQHEPTIEVNTLKDEIERLQLMHRRMMGKELEGLTYNELHNLEQQLTEGILSVKDRKEKVLLEQLEKSKLQEKKVMQQNEVLLEKIEE 173
                     445556779*****************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-32276IPR002100Transcription factor, MADS-box
CDDcd002654.29E-40275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1886171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.62987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRGGLMK KAKELAVLCD AQVAVIIFSG TGKLYEFASS  60
RMEQILARYS RNHESPELAT VEHAADQHEP TIEVNTLKDE IERLQLMHRR MMGKELEGLT  120
YNELHNLEQQ LTEGILSVKD RKEKVLLEQL EKSKLQEKKV MQQNEVLLEK IEELRRQTAR  180
VSSIENRVIM SKDSCMSSSS MHQQRASDKD ATSDTSLRLG FSSVDLSPKP KIPKLESSKD  240
CKSAMIVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22177177MEF2C
5f28_B2e-22177177MEF2C
5f28_C2e-22177177MEF2C
5f28_D2e-22177177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075339.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075339.10.0MADS-box transcription factor 23
SwissprotQ9M2K82e-61AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A2G9HEU81e-127A0A2G9HEU8_9LAMI; MADS box transcription factor
STRINGXP_009591403.11e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.15e-52AGAMOUS-like 18