PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075449.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 238aa    MW: 26606.5 Da    PI: 6.937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-1161107354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr ll  +      K +Ka+ L k+ve +++L
  XP_011075449.1  61 ENHKEAERRRRQRINAHLHKLRALLLCN-----SKTDKASLLGKVVERVREL 107
                     68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.81158107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-1259116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-1261117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-961107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-1061110No hitNo description
SMARTSM003532.5E-1064113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MMQPDNSPEF SSLYQFILAG NGGFPAVHSH CGSISSFNPT EDVLEFTDLQ NSEGRAFAAS  60
ENHKEAERRR RQRINAHLHK LRALLLCNSK TDKASLLGKV VERVRELKQQ TSEIMQLDQT  120
TLIPSESDEI AVMQKHDSMD GKSVVIRASV CCEDRVDLIP ELIEILKPLD LRPLRAEIAT  180
LGGRIKNVIH VLGGENQTAD ETALCLKDAL ETMVSRSCVG GEIKTKRRRM FDHQKIMG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075449.11e-177transcription factor bHLH106
SwissprotO806741e-50BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2G9HQY13e-92A0A2G9HQY1_9LAMI; Uncharacterized protein
STRINGMigut.J01640.1.p1e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]