PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075470.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 307aa MW: 34765.9 Da PI: 6.5067

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.2e-18	93	146	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_011075470.1 93 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 146 456899***********************************************9 PP
2	HD-ZIP_I/II	129.1	1.8e-41	92	182	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k+en++L++++++L++e+ XP_011075470.1 92 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKAENDALQAHNHKLHAEI 182 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-19	82	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	88	148	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	91	152	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-15	93	146	IPR001356	Homeobox domain
CDD	cd00086	1.99E-16	93	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-19	95	155	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	119	128	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	123	146	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	128	144	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.6E-15	148	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MTCEMAFFHS NFMLQTPPHQ EDHDQNHPST SLPPISLPSC TPQEFHGGVA SLLAGKRSSM 60 SFSTGIDVCE DHMNNHNHGE DELSDDGSQV GEKKRRLNME QVKTLEKNFE LGNKLEPERK 120 MQLARALGLQ PRQIAIWFQN RRARWKTKQL EKDYDLLKRQ FEAVKAENDA LQAHNHKLHA 180 EILALKSREP TESINLNKET EGSCSNRSEN SSEIKLDIST TTPAATCTES PLSTHPIPRA 240 LFPSTSSLSR PGGVVAHQLF HNSSSRPEIH HCPKMDQTVK EESLCNMFVG MDDQTGFWPW 300 LEQQNFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075470.1	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-112	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G9GFL1	1e-167	A0A2G9GFL1_9LAMI; Transcription factor HEX
STRING	VIT_01s0026g01950.t01	1e-153	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-109	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]