PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075476.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 95aa    MW: 10705 Da    PI: 9.362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-0820621454
                    HHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                    d+i +  ++L++l+P+ +  + +s K+s + +L+++++YI+sL
  XP_011075476.1 20 DQIADLVSKLQQLIPEiRNsRRRSDKVSASKVLQETCNYIRSL 62
                    6899999*********866799*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-8477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.198662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-82078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-52062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRRSSRSR QSGAARISDD QIADLVSKLQ QLIPEIRNSR RRSDKVSASK VLQETCNYIR  60
SLHREVDDLS DRLSELLDST DSDSAQAAII RSLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075476.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075476.12e-58transcription factor PRE6
SwissprotQ9LJX17e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G9GFK72e-44A0A2G9GFK7_9LAMI; Uncharacterized protein
STRINGEMJ281144e-44(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-28bHLH family protein