PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075490.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 370aa MW: 39350.7 Da PI: 9.8752

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.4	1.9e-28	60	110	2	52
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLl 52 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWL XP_011075490.1 60 PPKRASTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLT 110 789**********************************************74 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-26	65	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.762	66	120	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDAGHGNAMH APNFPLQLLE KRDHRHHHHH REEACSTSTH LPVSAPNTSS NSSPQHKKPP 60 PKRASTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLT GTGTIPANFT 120 SLNISARSSG STISAASHLR NNNYFSQNFA APQFRIRADN QWERSVEDSS ETERRRLLFP 180 GVGLASSDQT RMNFLSGNVN MNVNAMLQAK QELRDTGLEM AVAAAPEGEG SIGRKRRPEE 240 DLPPAVQTQM ANYMLQSSAG SIPASQGQIP ATTFLMNGES LWTFPSVGNS GIYRGSAVSS 300 SGLHLMNLPA SVTLLQGQQL ATGNEGGGGA VVDGHLGMLA ALNAFRSSPV GGGVAAEAHS 360 SGHGSGSAAG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDAGHGNAMH APNFPLQLLE KRDHRHHHHH REEACSTSTH LPVSAPNTSS NSSPQHKKPP  60
PKRASTKDRH TKVDGRGRRI RMPATCAARV FQLTRELGHK SDGETIEWLT GTGTIPANFT  120
SLNISARSSG STISAASHLR NNNYFSQNFA APQFRIRADN QWERSVEDSS ETERRRLLFP  180
GVGLASSDQT RMNFLSGNVN MNVNAMLQAK QELRDTGLEM AVAAAPEGEG SIGRKRRPEE  240
DLPPAVQTQM ANYMLQSSAG SIPASQGQIP ATTFLMNGES LWTFPSVGNS GIYRGSAVSS  300
SGLHLMNLPA SVTLLQGQQL ATGNEGGGGA VVDGHLGMLA ALNAFRSSPV GGGVAAEAHS  360
SGHGSGSAAG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ040488	2e-56	KJ040488.1 Sesamum indicum clone TilSSR_11689 microsatellite Sesame_11689 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075490.2	0.0	transcription factor TCP15-like
TrEMBL	A0A022QL97	1e-115	A0A022QL97_ERYGU; Uncharacterized protein
STRING	Migut.L01307.1.p	1e-115	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-41	TCP family protein