PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011075632.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 391aa MW: 44041.8 Da PI: 6.011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011075632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	5.9e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yL++k+++k+l++ e ik++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++++ XP_011075632.1 16 MLPGFRFHPTDEELVGFYLTRKIQQKPLSI-ELIKQLDIYKYDPWDLPKLAISGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYAS 109 579*************************.89***********76667899*********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl XP_011075632.1 110 eDSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 143 67778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-57	15	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.488	16	173	IPR003441	NAC domain
Pfam	PF02365	3.2E-25	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MEDEYKNECD KIDEVMLPGF RFHPTDEELV GFYLTRKIQQ KPLSIELIKQ LDIYKYDPWD 60 LPKLAISGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYASE DSKCIGLKKS 120 LVFYKGRAAK GIKTDWMMHE FRLPSDSVSH NKRYLEQNIP ANEAWAICRI FKKAKSTTRA 180 LSHSWVSPVL DTTNASTTTN MIDPINVASD IQFTGNTLIA NKSITNSTLQ FGFCNEIEHS 240 SVTSFSPLPF PVSVSSGDQH DLTPSYNTFS SNETCELAAS KCDINLDASS LLLDMSNSMS 300 GDLMKGSYNV DFSMFGVAHE EVVLMQGNLG HGSEVEVLEK GQHSGLGQLV DEQWETIRSM 360 NMGFPNYRLP LSLGTDHIWK SSLLWGSSPC P

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MEDEYKNECD KIDEVMLPGF RFHPTDEELV GFYLTRKIQQ KPLSIELIKQ LDIYKYDPWD  60
LPKLAISGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYASE DSKCIGLKKS  120
LVFYKGRAAK GIKTDWMMHE FRLPSDSVSH NKRYLEQNIP ANEAWAICRI FKKAKSTTRA  180
LSHSWVSPVL DTTNASTTTN MIDPINVASD IQFTGNTLIA NKSITNSTLQ FGFCNEIEHS  240
SVTSFSPLPF PVSVSSGDQH DLTPSYNTFS SNETCELAAS KCDINLDASS LLLDMSNSMS  300
GDLMKGSYNV DFSMFGVAHE EVVLMQGNLG HGSEVEVLEK GQHSGLGQLV DEQWETIRSM  360
NMGFPNYRLP LSLGTDHIWK SSLLWGSSPC P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	7	179	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	7	179	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	7	179	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	7	179	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	7	179	10	174	NAC domain-containing protein 19
3swm_B	3e-54	7	179	10	174	NAC domain-containing protein 19
3swm_C	3e-54	7	179	10	174	NAC domain-containing protein 19
3swm_D	3e-54	7	179	10	174	NAC domain-containing protein 19
3swp_A	3e-54	7	179	10	174	NAC domain-containing protein 19
3swp_B	3e-54	7	179	10	174	NAC domain-containing protein 19
3swp_C	3e-54	7	179	10	174	NAC domain-containing protein 19
3swp_D	3e-54	7	179	10	174	NAC domain-containing protein 19
4dul_A	2e-54	7	179	7	171	NAC domain-containing protein 19
4dul_B	2e-54	7	179	7	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011075632.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075632.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	4e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2G9HI28	1e-145	A0A2G9HI28_9LAMI; Uncharacterized protein
STRING	VIT_01s0026g02360.t01	1e-137	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]