PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075653.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 424aa    MW: 47247.4 Da    PI: 9.0256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.3e-33159215259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkk+ers+ d++++ei+Y+g+H h+
  XP_011075653.1 159 DDGYNWRKYGQKQVKGSEYPRSYYKCTNQNCPVKKKIERSH-DGHITEIIYKGQHSHP 215
                     8****************************************.***************8 PP
2WRKY107.37.8e-34325383159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  XP_011075653.1 325 LDDGYRWRKYGQKVVKGNPYPRSYYKCTNPGCNVRKHVERAASDPKAVITTYEGKHNHD 383
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29153217IPR003657WRKY domain
SuperFamilySSF1182909.68E-26157217IPR003657WRKY domain
SMARTSM007741.5E-36158216IPR003657WRKY domain
PfamPF031063.9E-25159215IPR003657WRKY domain
PROSITE profilePS5081124.294159217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37310385IPR003657WRKY domain
SuperFamilySSF1182906.15E-30317385IPR003657WRKY domain
PROSITE profilePS5081138.503320385IPR003657WRKY domain
SMARTSM007744.3E-40325384IPR003657WRKY domain
PfamPF031062.2E-26326383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTLKTTTARF LSFSPAPCRR LPPLCRTLGI SYQQNRPAGL MLSQHQGMFT IPPGLSPASF  60
LDSPGFFQSS QGPLGIPHFS AQLTAQAQSQ MHIHSEYPSL SAPPASSLAQ LQPRPSSASL  120
KRNMPPPMPE QNIIKDSSEI SHSDQKFQPP NLNVDKPADD GYNWRKYGQK QVKGSEYPRS  180
YYKCTNQNCP VKKKIERSHD GHITEIIYKG QHSHPPPNKR AKDNPDGTMN NQGSYGLDSE  240
GQTGNLNKSY DGMKDQESSQ ATPEHISGSS DSEEVVDTET RVNGRDEDET DSKRRNIDIQ  300
SSPPNHRTVT EPKIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPYPRSYYK CTNPGCNVRK  360
HVERAASDPK AVITTYEGKH NHDVPASKMR IHNTADAASQ LRPHNAVTDG QTANRRLEFG  420
NNDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43159386878Probable WRKY transcription factor 4
2lex_A3e-43159386878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075653.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075653.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 4
SwissprotQ9XI901e-133WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2G9GES30.0A0A2G9GES3_9LAMI; Uncharacterized protein
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-133WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]