PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075721.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 253aa    MW: 28985.2 Da    PI: 9.7117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-15893193
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                    ffk+++p   + +g l lp  f+++  ++  +s +  + +++   W++++  ++++++ + + +GW +Fv+++gL +gDfvvF+++g+  f+ v
  XP_011075721.1  8 FFKIMMP---GFQGKLNLPPAFCKKVREE--RS-DWAIVTSRKGMWKMNV--CRNPEGlISFVNGWPDFVSDHGLSVGDFVVFEHTGDLHFNAV 93
                    7777755...4445588******999633..44.67777888889*****..99999989999*********************9987666433 PP
2B358.51.2e-18144227488
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +++s++ ksg++++p +f ++++++  +   ++l+d++ r+W +kl+++++++    +++GW +F  +n+L+egD++vF+++++s
  XP_011075721.1 144 LTLKSSHQKSGQVTIPASFSRSNNLN--GFSSIILTDPNRREWPIKLSFQRTGQFrARMATGWVSFYASNKLQEGDVCVFEVNRSS 227
                     4558999999*************988..4447*****************888887799***********************77653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-194100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-184100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.391598IPR003340B3 DNA binding domain
CDDcd100171.53E-14696No hitNo description
SMARTSM010191.6E-148103IPR003340B3 DNA binding domain
PfamPF023626.9E-13893IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-19137241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-21137241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-16140241No hitNo description
SMARTSM010196.9E-13141232IPR003340B3 DNA binding domain
PROSITE profilePS5086314.071141243IPR003340B3 DNA binding domain
PfamPF023622.8E-16142227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEGNPRCFFK IMMPGFQGKL NLPPAFCKKV REERSDWAIV TSRKGMWKMN VCRNPEGLIS  60
FVNGWPDFVS DHGLSVGDFV VFEHTGDLHF NAVVFDVSAC NKEFVVEFKK EDPGRQVHSK  120
YHSRNTKRKP DKESVISKKP YFVLTLKSSH QKSGQVTIPA SFSRSNNLNG FSSIILTDPN  180
RREWPIKLSF QRTGQFRARM ATGWVSFYAS NKLQEGDVCV FEVNRSSQCN KSIMMDVKIF  240
RDPLVHDIDS LDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075721.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2G9H5268e-88A0A2G9H526_9LAMI; Uncharacterized protein
STRINGMigut.D01639.1.p2e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-22B3 family protein