PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011075874.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 623aa    MW: 69505.4 Da    PI: 4.6732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011075874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.3e-5391371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + ++++++ew+fF+++d+ky++g+r nrat++gyWkatgkd++++
  XP_011075874.1   9 LPVGYRFRPTDEELIDHYLRLKINGRHKEV-SVIREIDVCKWEPWDLPdlSVIESTDNEWFFFCPKDRKYQNGQRLNRATEKGYWKATGKDRNIT 102
                     799************************999.99**************96448888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+kg+++g+kktLvfy+grap+g++t+Wv+heyr+
  XP_011075874.1 103 SRKGAKIGMKKTLVFYTGRAPDGKRTNWVIHEYRA 137
                     *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-594160IPR003441NAC domain
PROSITE profilePS5100556.0569160IPR003441NAC domain
PfamPF023658.4E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MAVLPVKALP VGYRFRPTDE ELIDHYLRLK INGRHKEVSV IREIDVCKWE PWDLPDLSVI  60
ESTDNEWFFF CPKDRKYQNG QRLNRATEKG YWKATGKDRN ITSRKGAKIG MKKTLVFYTG  120
RAPDGKRTNW VIHEYRATDK SLDGTHPGQG AFVLCRLFKK TDLKQDEIAE SSNCNEVEEI  180
VSSPTIVKPS ADEEQSESVT PTFGGLAEMQ PSSVESCPNL NSEQAMVEGA PVPIDWQSNS  240
CIADEVEDNI LDTTSIPPNP ELEKLLGEFC PPLQETSDWK IFSPLHSQMQ SELGNQYLYS  300
SFTGDINNSQ HNIPFQYGTN ASDINEFLDS VLIDPDEQSF GGIYSISSID SAKHINMHQL  360
VNDGNSNSES EGEVSQRNVN VEPSILQCEL IEENIKQESP FQSEVTSDMA AVQQSVNNSH  420
FGNNYGHRSL DFANNSFKVP NDFTTVSASN QIPYLSNIEE AGAYRPALGD ATSGPGIKIR  480
TRQIPNQSSI QNSVAQGTAP RRIRLQKKFQ IGPVECRLPN ESTDSKIIHE GEPIQDDKAT  540
TVHALDKLKE STSDEANKDG QSNDISPSFK AESDFLDKEP KDVPLLRSGW TSRLSVSSSC  600
YMPKLLVATS LTIMLVAVWY SIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-43916215170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011075874.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075874.10.0NAC domain-containing protein 62
SwissprotQ9LKG81e-94NAC91_ARATH; NAC domain-containing protein 91
TrEMBLA0A2G9G0M40.0A0A2G9G0M4_9LAMI; Uncharacterized protein
STRINGMigut.F00136.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.25e-97TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]