PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076143.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 669aa MW: 74225.4 Da PI: 8.1795

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rHir+H XP_011076143.1 77 KCEKCSREFCSPINYRRHIRVH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.494	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MPAAKLCSSG THNAMKSEEG SDSLDTFIRQ AIGKEPLLPF SRTADNPVQW IQLLHALDQP 60 DLPGWPLMTP LKVQMQKCEK CSREFCSPIN YRRHIRVHRR SLNVDKESHK NRDLLAAFWD 120 KLSLEQAKDV VSFDDVMLKE IPGSSLARAL ASSLRKPGVW TLPQAYVKAG STLLDIIQAK 180 SSRLPISSQE LFSILDDASE RTFLCAGTTE TVQKYIFDGE TAKNSLELKN LVASTSFLFE 240 QQLVKAWVAD KDAEALRCQK LLVEEEEAAQ KRQALLLERK KQKKLRQKEQ KVKEQFYGSN 300 ENLNVDVEAV DGPTSTEASG PSSPSDCNSN SPDVPINLDS GLESTQPQSK EPEEEIGAHS 360 NISSEHINLG DAQTIEPANG YRAIVTNRCH VSKSQRGSRY GFHVSPHLQT FKPETLHKTG 420 PSKDRSLLNG SKVWTKKLKV DSYRESLKPP SLQGENGHQI EENKCEVIIG SISVALKNSV 480 PHHQDSRPDE AQDVSSTEHA MLKKKNASEK LIKANSSQSG SSRGASKLWR PVIHGEVRSV 540 TPFDRGNEDS AQSQSTDSDG IDNRKHYHVV PDENAQGGCL PFSSIAAKEF LAQRWKEAIS 600 SDHVKLVLSA GPQPPGCSDV QQDSSTVYNV PELHECINNQ FGRNVQGKFS KKQEKSLKVK 660 YRPKQKAVG

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MPAAKLCSSG THNAMKSEEG SDSLDTFIRQ AIGKEPLLPF SRTADNPVQW IQLLHALDQP  60
DLPGWPLMTP LKVQMQKCEK CSREFCSPIN YRRHIRVHRR SLNVDKESHK NRDLLAAFWD  120
KLSLEQAKDV VSFDDVMLKE IPGSSLARAL ASSLRKPGVW TLPQAYVKAG STLLDIIQAK  180
SSRLPISSQE LFSILDDASE RTFLCAGTTE TVQKYIFDGE TAKNSLELKN LVASTSFLFE  240
QQLVKAWVAD KDAEALRCQK LLVEEEEAAQ KRQALLLERK KQKKLRQKEQ KVKEQFYGSN  300
ENLNVDVEAV DGPTSTEASG PSSPSDCNSN SPDVPINLDS GLESTQPQSK EPEEEIGAHS  360
NISSEHINLG DAQTIEPANG YRAIVTNRCH VSKSQRGSRY GFHVSPHLQT FKPETLHKTG  420
PSKDRSLLNG SKVWTKKLKV DSYRESLKPP SLQGENGHQI EENKCEVIIG SISVALKNSV  480
PHHQDSRPDE AQDVSSTEHA MLKKKNASEK LIKANSSQSG SSRGASKLWR PVIHGEVRSV  540
TPFDRGNEDS AQSQSTDSDG IDNRKHYHVV PDENAQGGCL PFSSIAAKEF LAQRWKEAIS  600
SDHVKLVLSA GPQPPGCSDV QQDSSTVYNV PELHECINNQ FGRNVQGKFS KKQEKSLKVK  660
YRPKQKAVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	284	ERKKQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076143.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076143.1	0.0	uncharacterized protein LOC105160463 isoform X1
Refseq	XP_020548920.1	0.0	uncharacterized protein LOC105160463 isoform X1
TrEMBL	A0A2G9GWD2	0.0	A0A2G9GWD2_9LAMI; Uncharacterized protein
STRING	Migut.F00325.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-124	C2H2-like zinc finger protein