PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076144.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 602aa MW: 66901.1 Da PI: 8.5836

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	10	31	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rHir+H XP_011076144.1 10 KCEKCSREFCSPINYRRHIRVH 31 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.494	9	31	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MTPLKVQMQK CEKCSREFCS PINYRRHIRV HRRSLNVDKE SHKNRDLLAA FWDKLSLEQA 60 KDVVSFDDVM LKEIPGSSLA RALASSLRKP GVWTLPQAYV KAGSTLLDII QAKSSRLPIS 120 SQELFSILDD ASERTFLCAG TTETVQKYIF DGETAKNSLE LKNLVASTSF LFEQQLVKAW 180 VADKDAEALR CQKLLVEEEE AAQKRQALLL ERKKQKKLRQ KEQKVKEQFY GSNENLNVDV 240 EAVDGPTSTE ASGPSSPSDC NSNSPDVPIN LDSGLESTQP QSKEPEEEIG AHSNISSEHI 300 NLGDAQTIEP ANGYRAIVTN RCHVSKSQRG SRYGFHVSPH LQTFKPETLH KTGPSKDRSL 360 LNGSKVWTKK LKVDSYRESL KPPSLQGENG HQIEENKCEV IIGSISVALK NSVPHHQDSR 420 PDEAQDVSST EHAMLKKKNA SEKLIKANSS QSGSSRGASK LWRPVIHGEV RSVTPFDRGN 480 EDSAQSQSTD SDGIDNRKHY HVVPDENAQG GCLPFSSIAA KEFLAQRWKE AISSDHVKLV 540 LSAGPQPPGC SDVQQDSSTV YNVPELHECI NNQFGRNVQG KFSKKQEKSL KVKYRPKQKA 600 VG

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MTPLKVQMQK CEKCSREFCS PINYRRHIRV HRRSLNVDKE SHKNRDLLAA FWDKLSLEQA  60
KDVVSFDDVM LKEIPGSSLA RALASSLRKP GVWTLPQAYV KAGSTLLDII QAKSSRLPIS  120
SQELFSILDD ASERTFLCAG TTETVQKYIF DGETAKNSLE LKNLVASTSF LFEQQLVKAW  180
VADKDAEALR CQKLLVEEEE AAQKRQALLL ERKKQKKLRQ KEQKVKEQFY GSNENLNVDV  240
EAVDGPTSTE ASGPSSPSDC NSNSPDVPIN LDSGLESTQP QSKEPEEEIG AHSNISSEHI  300
NLGDAQTIEP ANGYRAIVTN RCHVSKSQRG SRYGFHVSPH LQTFKPETLH KTGPSKDRSL  360
LNGSKVWTKK LKVDSYRESL KPPSLQGENG HQIEENKCEV IIGSISVALK NSVPHHQDSR  420
PDEAQDVSST EHAMLKKKNA SEKLIKANSS QSGSSRGASK LWRPVIHGEV RSVTPFDRGN  480
EDSAQSQSTD SDGIDNRKHY HVVPDENAQG GCLPFSSIAA KEFLAQRWKE AISSDHVKLV  540
LSAGPQPPGC SDVQQDSSTV YNVPELHECI NNQFGRNVQG KFSKKQEKSL KVKYRPKQKA  600
VG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	217	ERKKQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076144.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076144.1	0.0	uncharacterized protein LOC105160463 isoform X3
TrEMBL	A0A2G9GWD2	0.0	A0A2G9GWD2_9LAMI; Uncharacterized protein
STRING	Migut.F00325.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-103	C2H2-like zinc finger protein