PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076262.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24123.7 Da    PI: 9.9703
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.9e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  XP_011076262.1  9 KRIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59
                    79***********************************************96 PP
2K-box74.92.2e-2581170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       e+++++l++e+a + k+ie L++ +R+llG +L+s+sl+eLq++ +qLe+sl++iRs+K +l++e+i +lq kek+l een++L +k+
  XP_011076262.1  81 EVEHHTQHLRHEAAVMAKKIELLENCHRKLLGHNLGSCSLEELQEIDNQLERSLNNIRSRKAQLYKEEITKLQAKEKRLLEENERLCEKM 170
                     457889********************************************************************************8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.506161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-41160IPR002100Transcription factor, MADS-box
CDDcd002653.58E-40371No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-33389IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014866.4E-2683170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.8886176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKVQMKR IENASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSS  60
NMQKTVQRYL EVTRERNTGI EVEHHTQHLR HEAAVMAKKI ELLENCHRKL LGHNLGSCSL  120
EELQEIDNQL ERSLNNIRSR KAQLYKEEIT KLQAKEKRLL EENERLCEKM GLKQRHEKGK  180
VIGSCSQSTQ SSEVVTELFI GLPTTRNAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21173173MEF2 CHIMERA
6byy_B2e-21173173MEF2 CHIMERA
6byy_C2e-21173173MEF2 CHIMERA
6byy_D2e-21173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076262.11e-150MADS-box protein AGL42
RefseqXP_011076263.11e-150MADS-box protein AGL42
RefseqXP_020548859.11e-150MADS-box protein AGL42
SwissprotQ9FIS16e-78AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A2G9I9331e-113A0A2G9I933_9LAMI; MADS box transcription factor
STRINGMigut.F01157.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.37e-72AGAMOUS-like 42