PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076440.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 320aa    MW: 34265.6 Da    PI: 10.6472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-1192137247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W+++E+  ++ + ++lG+g+Wk Ia+ +   R   q+ s+ qky
   XP_011076440.1  92 KPWSEDEHRSFLVGLEKLGKGDWKGIASNFVPSRNSSQVASHAQKY 137
                      58****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614724IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:1.10.10.609.0E-1085138IPR009057Homeodomain-like
PROSITE profilePS5129414.38686142IPR017930Myb domain
SuperFamilySSF466893.43E-1488141IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1589140IPR006447Myb domain, plants
SMARTSM007171.5E-890140IPR001005SANT/Myb domain
PfamPF002498.9E-992137IPR001005SANT/Myb domain
CDDcd001678.71E-893138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MPNECGRKCS HCGHNGHNSR TCSKGCTGFK LFGVKIAVSA ADNSGDSSIR KSKSLGNLQA  60
CNPENATGEG SGYLSDGLVN QSSKSHERKK GKPWSEDEHR SFLVGLEKLG KGDWKGIASN  120
FVPSRNSSQV ASHAQKYFIR MAATERKRRR ASVFDIPLNN HTNRPSQVTL GSQSNRPPEQ  180
GSHIAVNTSK KTGEVKGQAS MVAPGATSER PPLSPMKRRG IPDFCNVLYT PRVSSFAQGF  240
PAQVVVPTVS WVPVVNFSSQ SSNVYLSNGR GALPTCGTNL VPQPASMAAL RQLQPSQAAG  300
AAAPTSHKDE LNLNIRKLTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076440.10.0probable transcription factor At5g61620
SwissprotQ9FKF97e-51M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A022PWJ41e-109A0A022PWJ4_ERYGU; Uncharacterized protein
STRINGMigut.F00531.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-53MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]