PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076502.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 211aa MW: 23965.7 Da PI: 10.5969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	59	111	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ h +Er+RR+++ s ++ Lr+llP ++K s ++ ++Av+YIk+++ XP_011076502.1 59 RKIVHRDIERQRRQQMASLYASLRSLLPLeY---IKGKRSISDHMQEAVNYIKHME 111 5678***********************77...******************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.20E-10	57	115	No hit	No description
PROSITE profile	PS50888	14.183	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-10	59	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-13	59	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-11	60	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-5	64	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MFPLQHSGNQ FQGPSALGQD LSVDRAFLDS SSNLVARSTK KRQTRAKSGF QEPNDCKLRK 60 IVHRDIERQR RQQMASLYAS LRSLLPLEYI KGKRSISDHM QEAVNYIKHM EKNTKELRMR 120 RDKLMKRLSK RTGSEISVRL PNCVTVSCCP NGGAVEILIS CASKEQQGFP LSRVLMELLN 180 TGLNIVSCIS TKANDRFLHR IQTEVINYGS L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076502.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076502.2	1e-151	transcription factor bHLH120-like
TrEMBL	A0A2G9HSD7	1e-72	A0A2G9HSD7_9LAMI; Uncharacterized protein
STRING	XP_009624565.1	7e-54	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400019550	4e-54	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-35	bHLH family protein