PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076503.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 246aa    MW: 28111.9 Da    PI: 9.581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-1276128155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     rr  h  +ErrRR+++ + +  Lr+llP       +++ s  +  ++Av+YI+++q
  XP_011076503.1  76 RRILHRNIERRRRQEMSNLYTSLRSLLPLdH---VKGRRSVCDHMQEAVNYIQHMQ 128
                     7889*************************55...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.59875127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1376144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-976128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-1076132No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1176143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-681133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFTLQPGDEL VFGTPSISEH DHKLFPDNLI TGHACIETNI INFSSSSSNN NNEQRDLPRF  60
RPRQGQSRSR DEYNIRRILH RNIERRRRQE MSNLYTSLRS LLPLDHVKGR RSVCDHMQEA  120
VNYIQHMQKN VQELRSHRDK LKKLPNLSST KAAAVSNGGD NLPNCSVTVE VIRDGVEILI  180
SSSMKNSEFR LSRVLAELLE RQLNVVTCVS TNAKEGFLHK IQAEASDMTK LDPLLLQERL  240
TKAIIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17687RILHRNIERRRR
2138143DKLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0527602e-56KJ052760.1 Sesamum indicum clone TilSSR_23961 microsatellite Sesame_23961 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076503.10.0transcription factor bHLH118-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.17e-23bHLH family protein