PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076610.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 223aa MW: 24272.9 Da PI: 8.7164

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.2e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ael+ XP_011076610.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQVLQAELN 139 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_011076610.1 140 AVRAE 144 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.737	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-42	45	142	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSTERERLDQ EIGKKIKRES DAFPHQMGGR RHMLGPSGTL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQVLQAELNA VRAEILKYKY RETSMLPTSH VTLLSSGAVS IAAPPPTPLP 180 PPPPPPPPPS LPLTPSSSPI YTPVTSTAAD FTAISTENIT YFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	45	159	11	125	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	45	159	11	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076610.1	1e-163	LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-86	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A061FRT3	1e-112	A0A061FRT3_THECC; LOB domain-containing protein 15
STRING	EOY20040	1e-113	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-85	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]