PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076693.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-X1
Protein Properties Length: 869aa    MW: 97337.1 Da    PI: 8.3441
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.52.4e-07236255120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG H+C ++CH GpC+pC++
  XP_011076693.1 236 CGVHRCVEICHDGPCQPCRE 255
                     ******************85 PP
2zf-NF-X117.21.1e-05289308120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C++ CHeG+C++Cp+
  XP_011076693.1 289 CGRHVCERGCHEGQCGECPL 308
                     ******************95 PP
3zf-NF-X117.77.6e-06396414119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H C++ C+ G+CppC 
  XP_011076693.1 396 CGRHACKRRCCDGDCPPCL 414
                     ******************6 PP
4zf-NF-X117.87.2e-06425442320
        zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                     +HkC ++CH+G C pCp+
  XP_011076693.1 425 NHKCPAPCHRGACAPCPL 442
                     7***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.31E-573145No hitNo description
PROSITE patternPS01359074138IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.82E-5172220No hitNo description
PfamPF014220.0021184201IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0066184202IPR000967Zinc finger, NF-X1-type
CDDcd060081.27E-8226274No hitNo description
PfamPF014222.4E-5236254IPR000967Zinc finger, NF-X1-type
SMARTSM004382.5E-4236255IPR000967Zinc finger, NF-X1-type
CDDcd060083.00E-8279322No hitNo description
PfamPF014220.0078289307IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0024289308IPR000967Zinc finger, NF-X1-type
CDDcd060086.60E-7333382No hitNo description
PfamPF014220.015343362IPR000967Zinc finger, NF-X1-type
SMARTSM004380.19343363IPR000967Zinc finger, NF-X1-type
CDDcd060083.77E-8386434No hitNo description
PfamPF014227.0E-4396413IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0045396415IPR000967Zinc finger, NF-X1-type
CDDcd060084.70E-10413461No hitNo description
PfamPF014220.0086423441IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0041423442IPR000967Zinc finger, NF-X1-type
SMARTSM0043890480501IPR000967Zinc finger, NF-X1-type
PfamPF014226.4490500IPR000967Zinc finger, NF-X1-type
PfamPF0142285509518IPR000967Zinc finger, NF-X1-type
SMARTSM00438100509554IPR000967Zinc finger, NF-X1-type
PfamPF014220.19591602IPR000967Zinc finger, NF-X1-type
SMARTSM004380.73591621IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039634652IPR000967Zinc finger, NF-X1-type
PfamPF014221.1636651IPR000967Zinc finger, NF-X1-type
SMARTSM004385.4697718IPR000967Zinc finger, NF-X1-type
PfamPF014221.6699711IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MLSSATQPPS RSPLLSSDSD SDPSSPSANH RHPDLSSSIF QSYLSHSSSH HDQRQDLIKI  60
QSFLVSSRSG ALSCLICLER IKPTDPTWSC SSRCFAIFHL LCIQSWAHQS TTLAASRASS  120
RAAVVPDEDS LVWPCPKCRI EYPKSQTPKY YYCFCGKVQD PPRDPWVLPH SCGEICGRAL  180
KYNCGHFCLL LCHPGPCPAC PKLVRNKCFC GKLEDVRRCG FKSFSCNGVC RKLLECGVHR  240
CVEICHDGPC QPCREKGAYR CQCGKVEMER ECCDKEFRCN SACNKLLGCG RHVCERGCHE  300
GQCGECPLQG KRTCPCGKRV YEGMACDVSV PLCGATCEKL LICGFHRCPE RCHRGLCIET  360
CRIVVTKSCR CRSLKKQVPC YQELTCERKC QKLRDCGRHA CKRRCCDGDC PPCLEICDRR  420
LRCRNHKCPA PCHRGACAPC PLMVRIACSC GETQFEVPCG TETEQKPPKC PKPCPIAPLC  480
RHASNCKPHR CHYGPCPPCR LICDEEYSCG HRCKLRCHGP KPPPIPEFTL KPKKKKLNHL  540
IEATPGSPCP PCPEVVVRSC VGHHIGAERT MVCSNKAEFS CDNLCGNPLP CGNHYCTYVC  600
HPLKSHFSIS DTYRTGESCE ECNLPCQKER DPACPHPCPL PCHPGECPPC KALIKRSCHC  660
GSMVHVFECI YFNSMSKKEQ MAVRSCNGPC HRKLPNCTHL CPETCHTGPC PSPDKCSKKV  720
TVRCACQTLK KEWLCLNVQA AYRSTGCDPK DVPKNQYGVG LLPCDNDCKS KMKVPDAELH  780
FRQTKPPEEK ESDKATNVSK RRRRRQRVHE EENTSTLQKI VAVARTALLL LIVAVIIVAS  840
AYFGYKGLMW LSDWMNEYET RQRTRHSRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1799804KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076693.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076693.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G9GDU00.0A0A2G9GDU0_9LAMI; Transcription factor NF-X1
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors