PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076777.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 258aa MW: 28117.9 Da PI: 6.7562

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91	1.4e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q++++ +++k++G++ +++l++a p++ ++++++sl+yeA+ r+ +Pv+G+vg++ ++++ +++ XP_011076777.1 4 SCNGCRVLRKGCSQNCTLRPCLqwiksPESQANATLFLAKFYGRAGLINLINAGPTHLHPEIFRSLLYEACGRIINPVHGSVGLMCSGNWPRCHA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l+++ XP_011076777.1 99 AVEAVLQGA 107 *99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.538	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSQNCT LRPCLQWIKS PESQANATLF LAKFYGRAGL INLINAGPTH 60 LHPEIFRSLL YEACGRIINP VHGSVGLMCS GNWPRCHAAV EAVLQGAPLV MQLPGEDDSA 120 ADPQGCDIRH LSKDSSTSLR RIRTRNRFKR SATHAKTQVD SITADLVMSE SEGNFTITGW 180 DCGEDSKNFG GDLKRPPSRD SFSVETVEPA LANRNEQPAL GVKPEELTSE IGLDLTLGMN 240 PGLQAYMATV IEISDSET

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076777.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076777.1	0.0	LOB domain-containing protein 42-like
Swissprot	Q9M886	5e-67	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9HYG4	1e-126	A0A2G9HYG4_9LAMI; Uncharacterized protein
STRING	Migut.O00688.1.p	1e-122	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-69	LOB domain-containing protein 41