PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076793.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 439aa    MW: 48985.6 Da    PI: 5.6753
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box32.41.9e-101760340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+++ +k+++++C+ ++ +lC++C ++ H+       H++v
  XP_011076793.1 17 ARACDNCVKKRARWYCTADDAFLCQSCDSSVHSAnplarrHERV 60
                    678*****************************667888888876 PP
2CCT67.63.4e-23384427144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_011076793.1 384 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 427
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.2771562IPR000315B-box-type zinc finger
SMARTSM003366.3E-121562IPR000315B-box-type zinc finger
PfamPF006436.9E-91760IPR000315B-box-type zinc finger
CDDcd000211.65E-101862No hitNo description
PROSITE profilePS5101716.083384426IPR010402CCT domain
PfamPF062037.4E-18384426IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVSSDRKLAT AVGGKSARAC DNCVKKRARW YCTADDAFLC QSCDSSVHSA NPLARRHERV  60
RLKTASTKSS DDESRSGLQV SVPSWHQGFT RKARTPRQKK HNRLSSDELV SGISNPLHLV  120
PEVCSEDNSH EENEEQLLYR VPIFDPSVAE LRNSANSSEA ANSIQNGGET THVSGPELKP  180
ALNDFSQEMS HLQGFLPSEM DLAEFAADVE SLLGKGLENE SFDMEGLGLL DCDGKVKESR  240
ECSLGSGRVK VEDEEIGEVA NHRIDAEFID MGSETFELNF DYDSPITGEE EYIKAENVEP  300
ITPNNFDQDS NKVHDSKRIF LRLDYEGVLS AWDDQKSPWT TGERPDLDSA GCWPDCMGTC  360
GTVHVYGEMG MMIGHAVAVG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK  420
GRFVKRANLV APAFSLLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394410RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.20.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-102COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2G9HYH30.0A0A2G9HYH3_9LAMI; Uncharacterized protein
STRINGMigut.L01064.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-104B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]