PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076828.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 167aa MW: 18942.4 Da PI: 6.2302

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1e-40	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++ ee+re++++slvyeAe+r++dPvyG++g i +lq+++ +l+++l XP_011076828.1 12 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVAEEQREETVNSLVYEAEVRLQDPVYGCIGAIASLQHKMVELQHDLI 106 6*******************************************************************************************998 PP DUF260 96 llke 99 l+++ XP_011076828.1 107 LARA 110 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.284	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-40	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MKGHQEPRSS SSCAACKFLK RRCTPNCQFA PYFRSDEPKK FAKVHKVFGA SNVSKILNEV 60 AEEQREETVN SLVYEAEVRL QDPVYGCIGA IASLQHKMVE LQHDLILARA RLACYVDQQQ 120 RHSDSFFDID HVNMAPLVDI QEPSAGVVDA FDYNALPFDQ FSPFQFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-42	7	115	6	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-42	7	115	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076828.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076828.2	1e-122	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	8e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A4D9AD53	2e-80	A0A4D9AD53_SALSN; Uncharacterized protein
STRING	XP_009630762.1	1e-71	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-63	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]