PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076840.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 247aa    MW: 27328.7 Da    PI: 8.8336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0587109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C + F++   L  H+++H
  XP_011076840.1  87 YTCSFCRRAFRSAQALGGHMNVH 109
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-684113No hitNo description
Gene3DG3DSA:3.30.160.604.3E-485111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006787109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.53187114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDARTTPDMM GHQNELSYDA SSSLSVASIA RVWRPSGVLL VMVVVIHYSW MRPNTCTAGA  60
TPPQPATSDA SKVQEPLGGF MWPPRSYTCS FCRRAFRSAQ ALGGHMNVHR RDRAKLKQSS  120
PPQQAEAGTL HHQQNHTSNS CQEPPGRSHA QENATGRRHP TQLPEPLSNF DQEISPSIQP  180
WKPASGYDDF IETKLSVGID FVKRHKKSAA SALPFLQRKL CSSDRCSDSS REDIDLELRL  240
GDPPAVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1282109229superman protein
2l1o_A2e-1282109229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549121.11e-120transcriptional regulator SUPERMAN-like
TrEMBLB9SDZ42e-27B9SDZ4_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGXP_002524213.13e-28(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1400422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-23C2H2 family protein