PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076841.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 221aa    MW: 24297.2 Da    PI: 4.4047
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.25.5e-3871071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+apyf+ eq + +fa+vhk+FGasnv+kll +lp + r+da+ ++ yeA ar++dP+yG+v++i++lqqq+++l+ e+
  XP_011076841.1   7 SCGACKFLRRRCNDECVFAPYFCYEQaATHFAAVHKVFGASNVSKLLLHLPAHCRSDAAITISYEALARLHDPIYGCVAHIFALQQQVASLEDEI 101
                     6***********************99789****************************************************************** PP

          DUF260  95 allkee 100
                     + + ++
  XP_011076841.1 102 EITASQ 107
                     998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1586108IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-357104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTGLSSSCGA CKFLRRRCND ECVFAPYFCY EQAATHFAAV HKVFGASNVS KLLLHLPAHC  60
RSDAAITISY EALARLHDPI YGCVAHIFAL QQQVASLEDE IEITASQLMT DLGVDIATST  120
APYATSNYLY FPTQSNITSN CSQQEGPPIL HSGNASESQD WCSNMELQPP GTEYDISQGY  180
FNSSTATETL PQPLDQDAYL LEELINQGYD LHPLWMKNAA P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3331097112LOB family transfactor Ramosa2.1
5ly0_B3e-3331097112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076841.11e-166LOB domain-containing protein 25-like
TrEMBLA0A2G9GN367e-81A0A2G9GN36_9LAMI; Uncharacterized protein
STRINGMigut.F00757.1.p4e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-56LOB domain-containing protein 33