PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011076898.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 397aa MW: 44385.7 Da PI: 4.9

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011076898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.8	3.5e-52	27	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_011076898.1 27 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVTEIDVYKSEPWELAdySSLKSRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRAVR 120 579***********************99.88**********84347777888*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++++g+kktLvf++grap+g++t+Wvmheyrl XP_011076898.1 121 H-KNQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 154 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-62	24	177	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	27	177	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	29	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGQEVVVAAV GSAAPPVGMG APPPTSLAPG FRFHPTDEEL VRYYLRRKAC GKPFRFQAVT 60 EIDVYKSEPW ELADYSSLKS RDLEWYFFSP VDRKYGNGSR LNRATGKGYW KATGKDRAVR 120 HKNQTIGMKK TLVFHSGRAP DGKRTNWVMH EYRLCDSELE TAGVSQDAFV LCRIFQKSGL 180 GPPNGDRYAP FVEEEWDEDT GLVVPGGDAD DDVPNGDEAR AECTDIDQDT PPLSMAPPQI 240 ENPIGPQGLP FMCKRERSED DPEPLSLAQT KRSKYDDPNS SHANGSEDST TTSQDPPTKM 300 TTTNFSSALL EFPLLEPLEM KETHPANTHA FDSSNLEKSV PPGYLKFISN LENEILNVSM 360 ERETLKIEVM RAQAMINILQ SRIDILTKEN EDLRRHA

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGQEVVVAAV GSAAPPVGMG APPPTSLAPG FRFHPTDEEL VRYYLRRKAC GKPFRFQAVT  60
EIDVYKSEPW ELADYSSLKS RDLEWYFFSP VDRKYGNGSR LNRATGKGYW KATGKDRAVR  120
HKNQTIGMKK TLVFHSGRAP DGKRTNWVMH EYRLCDSELE TAGVSQDAFV LCRIFQKSGL  180
GPPNGDRYAP FVEEEWDEDT GLVVPGGDAD DDVPNGDEAR AECTDIDQDT PPLSMAPPQI  240
ENPIGPQGLP FMCKRERSED DPEPLSLAQT KRSKYDDPNS SHANGSEDST TTSQDPPTKM  300
TTTNFSSALL EFPLLEPLEM KETHPANTHA FDSSNLEKSV PPGYLKFISN LENEILNVSM  360
ERETLKIEVM RAQAMINILQ SRIDILTKEN EDLRRHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	26	177	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	26	177	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	26	177	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	26	177	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	26	177	19	168	NAC domain-containing protein 19
3swm_B	1e-52	26	177	19	168	NAC domain-containing protein 19
3swm_C	1e-52	26	177	19	168	NAC domain-containing protein 19
3swm_D	1e-52	26	177	19	168	NAC domain-containing protein 19
3swp_A	1e-52	26	177	19	168	NAC domain-containing protein 19
3swp_B	1e-52	26	177	19	168	NAC domain-containing protein 19
3swp_C	1e-52	26	177	19	168	NAC domain-containing protein 19
3swp_D	1e-52	26	177	19	168	NAC domain-containing protein 19
4dul_A	1e-52	26	177	16	165	NAC domain-containing protein 19
4dul_B	1e-52	26	177	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011076898.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076898.1	0.0	NAC domain-containing protein 78-like
Swissprot	Q9SQX9	1e-113	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A2U5FKN3	0.0	A0A2U5FKN3_SALMI; NAC domain containing protein 2
STRING	XP_009619467.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3140	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-107	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]