PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077027.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 360aa    MW: 39653.9 Da    PI: 6.6721
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17162211155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_011077027.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-16162220IPR016177DNA-binding domain
PfamPF008472.1E-9162211IPR001471AP2/ERF domain
CDDcd000181.13E-11163221No hitNo description
SMARTSM003801.0E-32163225IPR001471AP2/ERF domain
PROSITE profilePS5103217.78163219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17163219IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-6254298IPR016177DNA-binding domain
CDDcd000188.65E-13254299No hitNo description
SMARTSM003808.6E-12255303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLDLNVDAVF SVDSTSCDDE ADRRNTGTAD SVASTTTSTT NNAALAAADE VDCNSSTGKN  60
PLSTLNFSIL NKNVMMMDDD VNNDVANNTS SELQLFPMGA SSASPPPSAV KAKYWLNLSV  120
PEVSGSGPAV ELGICRAEMS ANNQMPQPQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI  180
WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GIDADINFTI SDYDEDMKQM KNLTKEEFVH  240
ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIQCNGR EAVTNFEPSN  300
YDREMNLSSR DEGSSSNLDL NLGISLSSDG PQQNDTTTNM HFPRSSSELP DAKRLKQQQE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077027.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077024.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ9SK032e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2G9HGU51e-169A0A2G9HGU5_9LAMI; Uncharacterized protein
STRINGMigut.F02018.1.p1e-156(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.26e-94related to AP2.7