PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077331.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TCP

Protein Properties

Length: 215aa MW: 22884.9 Da PI: 8.9209

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.4	6.2e-35	58	149	6	90
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.....eaesssssasnsssg.. 88 ++ +++h+kv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt +++s+s+c ++++ + XP_011077331.1 58 SSRKDRHSKVNGRGRRIRIPALCAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpaQAISSSSCavplsNPSA----------Tvq 142 6789********************************************************4444433333555433322222..........111 PP TCP 89 .....ka 90 ++ XP_011077331.1 143 spmtlSS 149 2222322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.3E-31	59	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.621	60	114	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSSSAMVLNE ISDNPLSLPP NLRHLALPPT APHPFTNASA ATQNLTPRVG SRKPAGGSSR 60 KDRHSKVNGR GRRIRIPALC AARVFQLTRE LGHRSDGETI EWLLRQAEPS IIAATGTGTV 120 PAQAISSSSC AVPLSNPSAT VQSPMTLSSP SSNIMLTAGP PPEPNCRPNL RQQEASTLEF 180 PMSGYRHMPF MALLLQPAMV EDEVDSYSGV GGDNQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077331.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077331.1	1e-155	transcription factor TCP11
Swissprot	Q9SJK7	1e-35	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A022R1J8	5e-62	A0A022R1J8_ERYGU; Uncharacterized protein
STRING	Migut.J00521.1.p	5e-65	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	5e-38	TCP family protein