PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077333.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 618aa    MW: 68996.7 Da    PI: 8.0762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09494541448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v q+G g+W++I + +     +Rt  ++k++w+++l
   XP_011077333.1 494 WTITEVRKLIDGVSQYGVGRWSRIKKLFFstsAHRTSVDLKDKWRNLL 541
                      9*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-13486543IPR009057Homeodomain-like
PROSITE profilePS5129416.178486545IPR017930Myb domain
SuperFamilySSF466894.69E-16488549IPR009057Homeodomain-like
SMARTSM007172.9E-9490543IPR001005SANT/Myb domain
PfamPF002491.3E-6494541IPR001005SANT/Myb domain
CDDcd116601.17E-19494542No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MDNGPPTRGL EDGTIDVERL LVEPHDGHAP MDSVICCRKT PENAMDIKDF SCSFGGPDTA  60
IAQEGEDILN GEVLDSMPNE VEFGYFRSHN DFCSMGDDYL LGVEFAESIT DLDYGCSEGL  120
AASVSDSQMQ SAGSDTRWKS SLFQIKQVLD CQKDQLDMGS SESDIPSCNK SEMLVEENPS  180
ISPGSCTVQN IGKTHNSPSC SSQDILSDGN DGEHSPSDEM FCSPMTQKND ETEVTGQDGE  240
TNIFPRQEAL TTSVQANCTD LPMQKRSRKP TQRYADELTS VQANCTGRPT QKRSRKPTQR  300
YVDELADPIP AYSRKRREVS TSTLKDKSLG VKDHKKCHVA SRATQLPAEE SSVIAIQVPF  360
GSLVHKECPK GRTCDLVQHV DTRNLMTKSK GKCVTPNKKK KRDECISAVH PKKRDDCAAS  420
KTKRDDQFTV AHSKKSSDRI SLASQKKKDD CIIAMTPKKR GDCLTGAHQK KRDDCTIPER  480
PEEVSGRRKH HRLWTITEVR KLIDGVSQYG VGRWSRIKKL FFSTSAHRTS VDLKDKWRNL  540
LKASGILDQG RQGEKKRNMA WRPLPKSILL RVCELATIYP YPKGQRPKIP LIHHDSPDRS  600
TDITLSDYRR ILRSINGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485492GRRKHHRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077333.10.0uncharacterized protein LOC105161373 isoform X1
TrEMBLA0A0K1SB990.0A0A0K1SB99_REHGL; Telomere repeat-binding factor like-protein
STRINGMigut.L01689.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-26TRF-like 6