PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077363.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family S1Fa-like
Protein Properties Length: 90aa    MW: 10090 Da    PI: 10.4243
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.79.3e-422490470
            S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      +ea+G+nPGlivll+vggl+l+flvgny+lyvyaqk+lPP+kkkPvskkk+kre+lkqGv++PGe
  XP_011077363.1 24 RGAEAQGFNPGLIVLLLVGGLILLFLVGNYVLYVYAQKTLPPKKKKPVSKKKMKRERLKQGVSAPGE 90
                    5689**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0072390No hitNo description
PfamPF046896.2E-402790IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MDYEPDAEFD RVPPSFDRMK NVVRGAEAQG FNPGLIVLLL VGGLILLFLV GNYVLYVYAQ  60
KTLPPKKKKP VSKKKMKRER LKQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077363.11e-58DNA-binding protein S1FA-like isoform X1
SwissprotQ7XLX69e-16S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLW9SCA32e-25W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.13e-26(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]