PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011077435.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 414aa MW: 46847 Da PI: 9.7816

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011077435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3e-18	31	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ +f+++e XP_011077435.1 31 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAAAVtsrcPGAPPAKTSAQCRHKMEKLRQRYRAEKQRSLSFpypAGRYFSSWFFFENME 123 8**********************************977555556699******************998765211223345666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.1E-19	30	125	No hit	No description
PROSITE profile	PS50090	6.876	32	92	IPR017877	Myb-like domain
SMART	SM00595	7.1E-10	39	130	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MSSATTAVSA ADAVTVADTV EKAPRRFPPP CWTQEETLAL IEAYRERWYA LRRGYLRTAD 60 WDAVAAAVTS RCPGAPPAKT SAQCRHKMEK LRQRYRAEKQ RSLSFPYPAG RYFSSWFFFE 120 NMEAMENGTA PPTSAQKSEN SDDGSRLKSF LDQNILKLKL KATNNDGSGA DLGFDNGVKG 180 KRFNSGTKMP SQYSPFLDME VVEKEEDVMP EDEGLVNYGR RKAMNATPQP PPKSKSKRPN 240 KMFNNLDVSG AFHQTRGGLH QEMLPPGLRM KKLGKLDQNM ESDNNRINNT TEEFWVKVSN 300 NNNNNNQNSG PPSFRTKYWA SIEPSANSRK RERDALEEIV ASIKVLGEGF VKMEKAKMEM 360 AREMEAMRME MEMKRNEMLL ESQKQIVDAF LKGLFELKKS KKVKTTTDSA TEDP

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MSSATTAVSA ADAVTVADTV EKAPRRFPPP CWTQEETLAL IEAYRERWYA LRRGYLRTAD  60
WDAVAAAVTS RCPGAPPAKT SAQCRHKMEK LRQRYRAEKQ RSLSFPYPAG RYFSSWFFFE  120
NMEAMENGTA PPTSAQKSEN SDDGSRLKSF LDQNILKLKL KATNNDGSGA DLGFDNGVKG  180
KRFNSGTKMP SQYSPFLDME VVEKEEDVMP EDEGLVNYGR RKAMNATPQP PPKSKSKRPN  240
KMFNNLDVSG AFHQTRGGLH QEMLPPGLRM KKLGKLDQNM ESDNNRINNT TEEFWVKVSN  300
NNNNNNQNSG PPSFRTKYWA SIEPSANSRK RERDALEEIV ASIKVLGEGF VKMEKAKMEM  360
AREMEAMRME MEMKRNEMLL ESQKQIVDAF LKGLFELKKS KKVKTTTDSA TEDP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011077435.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549543.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A2G9H105	1e-151	A0A2G9H105_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400052836	7e-93	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-33	Trihelix family protein