PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077827.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 323aa    MW: 36142.7 Da    PI: 6.8699
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.3e-33861941100
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k ltpsdv+k++rlv+pk++ae+h           +   e++  l++ede g+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F +
  XP_011077827.1  86 FEKPLTPSDVGKLNRLVIPKQHAEKHfplnvggggreS--GEKGLLLSFEDELGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVIFAR 178
                     99******************************987532..347779************************************************9 PP

                     -SSSEE..EEEEE-SS CS
              B3  85 dgrsefelvvkvfrks 100
                     + +++++l+++++r++
  XP_011077827.1 179 QPEDCGRLFIGWRRRN 194
                     888**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4078195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-3181192IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-2984183No hitNo description
PfamPF023622.2E-3086194IPR003340B3 DNA binding domain
SMARTSM010193.4E-2586194IPR003340B3 DNA binding domain
PROSITE profilePS5086314.60786194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSIDRCSPDP NSATAYWDGP RQLHHQADAA AGAMFCRQSP AYSFNLNDED DEELLQEQAA  60
DDGELTTNRQ SEGEDHTQRI PKEPLFEKPL TPSDVGKLNR LVIPKQHAEK HFPLNVGGGG  120
RESGEKGLLL SFEDELGKSW RFRYSYWNSS QSYVLTKGWS RFVKEKRLDA GDIVIFARQP  180
EDCGRLFIGW RRRNTGGGQK SGAAQPPPGG GGGGGWSRVL YPNQYPYPRQ HHQGSSSLPY  240
QSVCPHPVTQ DQVTVVGSGN NWKRLRLFGV NLECWEAGDE SEAEGSPMSS QGRAHPHPYH  300
QHYSHHRTHM DMNFSAGDVH RHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-48821934113B3 domain-containing transcription factor NGA1
5os9_B1e-48821934113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077827.10.0B3 domain-containing protein At2g36080 isoform X1
SwissprotQ9FNI35e-62Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2G9HGL21e-118A0A2G9HGL2_9LAMI; Uncharacterized protein
STRINGMigut.J00664.1.p1e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-55B3 family protein