PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078200.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 231aa    MW: 25946.9 Da    PI: 9.013
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19185218134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  XP_011078200.1 185 CADCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 218
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.703179215IPR000679Zinc finger, GATA-type
SMARTSM004014.8E-20179230IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12180219No hitNo description
Gene3DG3DSA:3.30.50.107.0E-16183218IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.97E-13184226No hitNo description
PfamPF003204.8E-17185218IPR000679Zinc finger, GATA-type
PROSITE patternPS003440185210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNLNSSPIEQ ISDDHHHHHQ QQPHQPFAPN PSPSVSCHIF FNSATQDHTG YSYDRRQFYH  60
PQHHLDDNYG ANYHGGSTCE IKNKVEGGLK LTLWKKEDEE YNESIVADKS TTNPVKWMSS  120
KMRLMHKMKN PTTTTTTDRV ALKISSSATA PTKLEDQKLQ PSSSLETDLS SNSFPSNNNS  180
PIRVCADCNT TKTPLWRSGP KGPKSLCNAC GIRQRKARRA MAAPLPISHQ Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0588738e-46KJ058873.1 Sesamum indicum clone TilSSR_30074 microsatellite Sesame_30074 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.21e-169LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A2G9HH176e-59A0A2G9HH17_9LAMI; Uncharacterized protein
STRINGXP_009604300.14e-40(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-23cytokinin-responsive gata factor 1