PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078235.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 126aa    MW: 14353.9 Da    PI: 5.0373
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-091458345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ +Ed++l +a  ++  g   +W++Ia+ ++ g+++ ++++++ 
   XP_011078235.1 14 VWSRQEDKILEQALVEFLVGidhRWRRIAEFLP-GKSPDEVRLHYE 58
                     5****************9999************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-81163IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-111469IPR009057Homeodomain-like
PfamPF002494.3E-81459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-81562IPR009057Homeodomain-like
CDDcd001671.15E-81561No hitNo description
PROSITE profilePS500907.9441561IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MVNLEQSVDS ATAVWSRQED KILEQALVEF LVGIDHRWRR IAEFLPGKSP DEVRLHYEAL  60
LHDIVEIDSG RVELPGYSDE SAPLGWDEHA RLRAPGQISF GGGNRSRHSE VERKKGTPWT  120
EDEHRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550455.19e-87transcription factor SRM1-like
TrEMBLA0A2G9IA531e-56A0A2G9IA53_9LAMI; Uncharacterized protein
STRINGMigut.F01593.1.p6e-42(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.16e-29MYB family protein