PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078402.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

YABBY

Protein Properties

Length: 183aa MW: 20739.7 Da PI: 8.91

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	195.6	2.2e-60	2	156	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + +eq+Cy+ CnfC+ +lavsvP + lf vvtvrCGhC+++ vn+a a q l + + + + ++++ +++++ + +s++ +++ XP_011078402.1 2 DVPEQLCYIPCNFCSIVLAVSVPCNNLFDVVTVRCGHCSNVWGVNMAAAFQCLQPSWQ-----------DVQAAGHTSTEYKVDHLGSSSKWNNK 85 579****************************************9998877655443...........22223322223322222222222232 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + + p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl XP_011078402.1 86 MAIQPSITHKPEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 156 2233334445555679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-68	4	156	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-8	91	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	103	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MDVPEQLCYI PCNFCSIVLA VSVPCNNLFD VVTVRCGHCS NVWGVNMAAA FQCLQPSWQD 60 VQAAGHTSTE YKVDHLGSSS KWNNKMAIQP SITHKPEQRI VNRPPEKRQR VPSAYNQFIK 120 EEIQRIKANN PEISHREAFS TAAKNWAHFP HIHFGLMLET NNQAFVNEGS GKHQMRRAAI 180 LKK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078402.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	1e-137	axial regulator YABBY 5
Swissprot	Q8GW46	2e-79	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2G9GBC8	1e-106	A0A2G9GBC8_9LAMI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-96	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-82	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]