PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078584.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 392aa    MW: 44429.7 Da    PI: 6.6421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.35.7e-57281551129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL kkv ++++++ ++i e+d++k+ePwdLpkk+k +ekew+fF++rd+ky+tg r+nrat+sgyWkatgkdke+ + 
  XP_011078584.1  28 LPPGFRFHPTDEEIIMHYLIKKVIDRRFTA-RAIGEADLNKCEPWDLPKKAKMGEKEWFFFCQRDRKYPTGMRTNRATESGYWKATGKDKEISKG 121
                     79*************************999.89***************99999*****************************************9 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfykgrapkgekt+Wvmheyrle
  XP_011078584.1 122 RNSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 155
                     99******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-6523180IPR003441NAC domain
PROSITE profilePS5100560.05328179IPR003441NAC domain
PfamPF023653.1E-2929154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEGGYGGAGP SAVNNSSEED EEYAVVELPP GFRFHPTDEE IIMHYLIKKV IDRRFTARAI  60
GEADLNKCEP WDLPKKAKMG EKEWFFFCQR DRKYPTGMRT NRATESGYWK ATGKDKEISK  120
GRNSLVGMKK TLVFYKGRAP KGEKTNWVMH EYRLEGNFSN YNFSRAAKEE WVVCRVFHKN  180
TAVRRSPGVE LARIDSFVDH LLDSPTLPPL TDYTCNSNDQ IPTSSFAAAD HHTDHHEHET  240
KVSRLISNDQ ILQYDQKHFL VPPTYTYLHP TIPFSSPPTT VFPYQASLSH AHQHHDELGP  300
IISGYPTTVF PFKGADHANL RLVAPKMERF STNNSVISHS QETGLSTENM GNEITSLHSK  360
GDIESKKAFD QELNGLGFSP DISDLDDLWS NC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53181857171NO APICAL MERISTEM PROTEIN
1ut4_B2e-53181857171NO APICAL MERISTEM PROTEIN
1ut7_A2e-53181857171NO APICAL MERISTEM PROTEIN
1ut7_B2e-53181857171NO APICAL MERISTEM PROTEIN
4dul_A2e-53181857171NAC domain-containing protein 19
4dul_B2e-53181857171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078584.10.0NAC domain-containing protein 92
SwissprotQ9FK441e-102NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2G9GVZ81e-164A0A2G9GVZ8_9LAMI; Uncharacterized protein
STRINGPOPTR_0019s04710.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-97Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]