PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078730.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 570aa    MW: 65172.6 Da    PI: 7.9184
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.92.5e-1396148259
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk 59 
                     W+++evlaL+++r++me ++ +       We+vs+k+ e gf+rs++qCkek+++ ++
  XP_011078730.1  96 WSNDEVLALLRLRSSMEMWFPDF-----TWEHVSRKLVELGFRRSAEQCKEKFDEESR 148
                     ********************998.....9************************97665 PP
2trihelix91.96.7e-29442538185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     rW+++e++aLi++r ++ ++++++              +++plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf
  XP_011078730.1 442 RWPREEIQALINLRCKLSSNSSTDHddssssskegaiaKAAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDSNKKR-SIDSRTCPYF 535
                     8**************9998888864455666777888799*******************************************8.78889***** PP

        trihelix  83 dql 85 
                     +ql
  XP_011078730.1 536 HQL 538
                     **9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.82988147IPR017877Myb-like domain
SMARTSM007171.492149IPR001005SANT/Myb domain
PfamPF138371.3E-995155No hitNo description
SMARTSM007179.8E-4439514IPR001005SANT/Myb domain
CDDcd122036.09E-20441519No hitNo description
PfamPF138371.5E-17441538No hitNo description
PROSITE profilePS500906.911442512IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MFDGVPSDQF HQFLVSRTSS LPIPLSFAAA AYDPYASLHS PTLQQQHHQH HQESPHKKFI  60
HDGKHVENPT AALMISTSLG LERERSRSMD PRPSSWSNDE VLALLRLRSS MEMWFPDFTW  120
EHVSRKLVEL GFRRSAEQCK EKFDEESRNL NNVSYNKNYR IFSELDELYP ADDQQTARVS  180
AERISQNMEI NPEKEDQEKA INKSAEANSE NVGEAAAAAD PCEEAMRKPE KSSKKRKRRD  240
KFEMFKGFCE SVVSKMMARQ EELHNKLIED IVKRDEEKIS REEAWKNQEM DRFKMEIEMR  300
AKEQASSGER QARIIEFLKK FTSDEDQHLA NKIEELIKVN YNMPSNSSTS LGKILETHHF  360
QTSQSKAEPS ISSSTKIQAH QNPSSFPSQD YPITATYKTK TPSPNSSPTS TPATKDSKSR  420
TSTSAVTTEI TSLAANYDTG KRWPREEIQA LINLRCKLSS NSSTDHDDSS SSSKEGAIAK  480
AAPLWERISQ GMLELGYKRS AKRCKEKWEN INKYFRKTKD SNKKRSIDSR TCPYFHQLSC  540
LYSEGTLVAP TSTTLPDHYS PEKHSHHTSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238KKRKRR
2235240RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0537044e-56KJ053704.1 Sesamum indicum clone TilSSR_24905 microsatellite Sesame_24905 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078730.10.0trihelix transcription factor GTL2
TrEMBLA0A068UJ841e-150A0A068UJ84_COFCA; Uncharacterized protein
TrEMBLA0A0D2SL931e-149A0A0D2SL93_GOSRA; Uncharacterized protein
TrEMBLB9REQ71e-149B9REQ7_RICCO; Transcription factor, putative
STRINGGorai.007G283800.11e-150(Gossypium raimondii)
STRINGXP_002512226.11e-150(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137001013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.16e-88Trihelix family protein