PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078767.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YB

Protein Properties

Length: 228aa MW: 25795.8 Da PI: 6.2835

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.6	5.7e-56	67	162	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+eas+kcqrekrktingdd+lwa+ tlGfedyv+plk+yl+kyre+ege XP_011078767.1 67 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDILWAIMTLGFEDYVNPLKLYLTKYREIEGE 161 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_011078767.1 162 K 162 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.2E-52	62	177	IPR009072	Histone-fold
SuperFamily	SSF47113	4.35E-40	69	177	IPR009072	Histone-fold
Pfam	PF00808	1.7E-28	72	136	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.6E-19	100	118	No hit	No description
PROSITE pattern	PS00685	0	103	119	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.6E-19	119	137	No hit	No description
PRINTS	PR00615	1.6E-19	138	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKRERDNEDE GPQIGQNSPF RISLESACPN TTNINDHNST LSATHSTNAN AGGIRATATT 60 NNNISNKEQD RFLPIANVGR IMKKVIPGNG KISKDAKETV QECVSEFISF VTGEASEKCQ 120 REKRKTINGD DILWAIMTLG FEDYVNPLKL YLTKYREIEG EKLNVPKQQR PEQHEQKQPD 180 MPYNSVYSST NMMSQPSFVS GDPPFPLPFT QTSIPKILPQ QNQFDWNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	3e-45	64	157	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	3e-45	64	157	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078767.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078767.1	1e-171	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	9e-62	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A2Z7ABS0	1e-103	A0A2Z7ABS0_9LAMI; Nuclear transcription factor Y subunit B-7-like
STRING	PGSC0003DMT400043176	8e-83	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	4e-64	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]