PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078862.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 347aa    MW: 37900.5 Da    PI: 6.119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09189236455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  XP_011078862.1 189 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQALQ 236
                     8*************************9....89999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15183254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-9183240No hitNo description
PROSITE profilePS5088814.5185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-15185253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-8191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEPKVEATQP QFRSGISGAN PVEMGLGFDE IHGLISAAPG TGGSSFTALL ELPPPQAVEL  60
LVKEDFPVKP MPPPIFPSNI ALIDRASKFS VFASADNSPE STNILSASSS MKLDLVKQEP  120
LESDSHPNSS SPAVSNQSLK SNKRKEREKK VKESNKKSKK VVANEASEDS GEKLPYVHVR  180
ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TAMVLDEIIN HVQALQRQVE  240
FLSMRLAAVN PRIDFNLDAL LAGEGGSSID NSYPGTFAPS IWSEGQINGS RQHQYQQPWH  300
FEGLHQPSWG REEDTSNFIT PETSLLSYDS PANSGKSQFI DESLSLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078863.10.0transcription factor bHLH48
SwissprotQ8VZ023e-86BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2G9HR440.0A0A2G9HR44_9LAMI; Uncharacterized protein
STRINGMigut.K00063.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.13e-82bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]