PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078910.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 235aa    MW: 26318.5 Da    PI: 6.5301
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.3e-35271192103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++ +isw+ +g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF++++F++g++++l++
  XP_011078910.1  27 FLLKTYMLVEDPATDGVISWNGEGTAFVVWQPAEFASDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFSNDKFRRGDRDKLCE 112
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+ks+
  XP_011078910.1 113 IRRRKSS 119
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3519111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3223116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MESSSDQSHH GKGLVEYVMR KAAPPPFLLK TYMLVEDPAT DGVISWNGEG TAFVVWQPAE  60
FASDLLPTLF KHSNFSSFVR QLNTYGFRKV ATNRWEFSND KFRRGDRDKL CEIRRRKSSS  120
SNKPQPDVQV QPAAAKLGQI EEDDQKSSSS TSSSSELATL ILDNKRLKQE NGFLSSELAV  180
MKKRCKGLVD LAAIYGGHLE REDQRGVDEL EETCSEGPKL FGVRLELEVE AGNNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-202512118125Heat shock factor protein 1
5d5w_B8e-21271164104Putative transcription factor
5d5x_B8e-21271164104Putative transcription factor
5d5x_E8e-21271164104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078910.11e-175heat stress transcription factor B-3-like
SwissprotO222309e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A022PWU91e-91A0A022PWU9_ERYGU; Uncharacterized protein
STRINGMigut.J01747.1.p2e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-66heat shock transcription factor B3