PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078995.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 258aa    MW: 29596.8 Da    PI: 6.575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH536.2e-1773124154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ +hn++Er RR+++N+ f++Lr+llP+ +   +skKls a+++ ++ +YI +L
  XP_011078995.1  73 KKLNHNAVERDRRRKMNTLFSTLRSLLPSdD---QSKKLSIAATVSRVLKYIPEL 124
                     6789*************************66...******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30772124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.06E-1473129No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1473140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1673143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1473124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1178130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLGISPQLAS LGCFMEDSNT LHHDQENPFF ISSVLSIDGD DQYLNDSPPS GKLFSNSHHG  60
EGFHHHHHHQ MVKKLNHNAV ERDRRRKMNT LFSTLRSLLP SDDQSKKLSI AATVSRVLKY  120
IPELRKEVER LDQKKETLMM MRTKICSQVS IDDDDFRTKL ARLSAVSATQ ISGEEIVVQI  180
SVPKLDKGNL ILSETLMHLE MEGFLVLTAS SFETLQGRLF CNLHLQAQES EVKDVDVWLK  240
EKILSFFQKV KKEEEEFY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0337025e-60KJ033702.1 Sesamum indicum clone TilSSR_4903 microsatellite sesame_4903 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549797.11e-167transcription factor ORG2-like
TrEMBLA0A2G9HLC35e-68A0A2G9HLC3_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-40bHLH family protein