PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079187.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 227aa    MW: 25932.9 Da    PI: 9.2129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-06107148955
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      rr  +r+ ++   L++llP++     +K++ a++Le+A +YI+ Lq
  XP_011079187.1 107 RRRQQQRLSDKTRCLQRLLPWD-----EKMDMATVLEEAYKYIRFLQ 148
                     23333567788888*******9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.79898147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-9106159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-8108156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-4121152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEDEFQFQIQ PPSLLLSGEA SSALPLVARL RFFGQRCRGN RDPLFAINDG VPAEAPPYNF  60
FSEAASSSLH HQLPGLLSLE LPQNTAVVES PMMNPRIETA QYGKQRRRRQ QQRLSDKTRC  120
LQRLLPWDEK MDMATVLEEA YKYIRFLQAQ VRVLQSMPCE SGGRPRRLHV QLLQVVVNSP  180
VAQTQLYSKG CCLYSVEQLV LLKKNAERKA LYHQMMLESS NPNPFLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549789.11e-123uncharacterized protein LOC105162763
TrEMBLA0A2G9HBM27e-86A0A2G9HBM2_9LAMI; Uncharacterized protein
STRINGXP_009790451.14e-39(Nicotiana sylvestris)
STRINGXP_010109560.13e-39(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-17bHLH family protein