PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079244.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 368aa    MW: 42646.8 Da    PI: 8.4578
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.7e-066484323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cg sF  + +Lk+H+++H
  XP_011079244.1 64 CEQCGASFQKPAHLKQHMQSH 84
                    *******************99 PP
2zf-C2H219.62.4e-0690114123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp  dC+ s++rk++L+rH+  H
  XP_011079244.1  90 FTCPvdDCHSSYRRKDHLTRHMLQH 114
                     89********************988 PP
3zf-C2H216.23e-05119144123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp  dC+++F+ + n++rH +  H
  XP_011079244.1 119 FECPveDCKRRFTIQGNMTRHVKEfH 144
                     89********************9988 PP
4zf-C2H216.52.4e-05158182123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C    Cgk+F+  s L+ H  +H
  XP_011079244.1 158 YICAehGCGKVFKYLSKLRAHEDSH 182
                     788889***************9888 PP
5zf-C2H218.17.4e-06248272223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ +Fs+ snL++Hi+  H
  XP_011079244.1 248 KCSieGCSLTFSTTSNLNQHIKAvH 272
                     789999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355351941IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-55880IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00696284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.386289IPR007087Zinc finger, C2H2
PfamPF138940.00126384No hitNo description
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-1170122No hitNo description
Gene3DG3DSA:3.30.160.607.0E-1381116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001990114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82790119IPR007087Zinc finger, C2H2
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5117145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.7E-6117145No hitNo description
SMARTSM003550.0097119144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346119149IPR007087Zinc finger, C2H2
PROSITE patternPS000280121144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-7153182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.036158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003555.8190215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
SMARTSM0035521218239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-9229269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.85E-10229283No hitNo description
SMARTSM003550.0017247272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.593247277IPR007087Zinc finger, C2H2
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
SMARTSM0035538278304IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGNEGEKVRG AIFTDIRRYY CEYCGICRSK KALIASHILA HHEEEIKEKE QIEEQGHGKK  60
LNICEQCGAS FQKPAHLKQH MQSHSLERPF TCPVDDCHSS YRRKDHLTRH MLQHQGKLFE  120
CPVEDCKRRF TIQGNMTRHV KEFHSESVDA NVKQPKEYIC AEHGCGKVFK YLSKLRAHED  180
SHVKLDSVEA FCAEPGCMKY FSNEQCLKEH ILSCHQYILC DKCGTKQLKK NIKRHMRIHE  240
GVSSERIKCS IEGCSLTFST TSNLNQHIKA VHMELKPFKC SIPSCHMKFA FKHVRDNHEK  300
SGCHVYTPGD FVESDEQFRS RPRGGRKRKY PVIETLMRKR IVPPSESDLV MNQGDEYPSW  360
IHSAESVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-196727420190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-196727420190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320328RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.10.0transcription factor IIIA
SwissprotQ84MZ41e-111TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A022Q2S20.0A0A022Q2S2_ERYGU; Uncharacterized protein
STRINGMigut.K00168.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-111transcription factor IIIA