PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079245.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 304aa    MW: 34983.1 Da    PI: 8.58
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-062650123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    ++Cp  dC+ s++rk++L+rH+  H
  XP_011079245.1 26 FTCPvdDCHSSYRRKDHLTRHMLQH 50
                    89********************988 PP
2zf-C2H216.52.3e-055580123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                    ++Cp  dC+++F+ + n++rH +  H
  XP_011079245.1 55 FECPveDCKRRFTIQGNMTRHVKEfH 80
                    89********************9988 PP
3zf-C2H216.81.8e-0594118123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C    Cgk+F+  s L+ H  +H
  XP_011079245.1  94 YICAehGCGKVFKYLSKLRAHEDSH 118
                     789889***************9888 PP
4zf-C2H218.45.8e-06184208223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ +Fs+ snL++Hi+  H
  XP_011079245.1 184 KCSieGCSLTFSTTSNLNQHIKAvH 208
                     789999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.34E-72252No hitNo description
Gene3DG3DSA:3.30.160.607.6E-92252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00192650IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8272655IPR007087Zinc finger, C2H2
PROSITE patternPS0002802850IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-65381No hitNo description
Gene3DG3DSA:3.30.160.608.0E-65381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00975580IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3465585IPR007087Zinc finger, C2H2
PROSITE patternPS0002805780IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-789118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.83E-591118No hitNo description
SMARTSM003550.03694118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38894123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SMARTSM003555.8126151IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128151IPR007087Zinc finger, C2H2
SMARTSM0035521154175IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.92E-10165219No hitNo description
Gene3DG3DSA:3.30.160.608.1E-9165205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017183208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.593183213IPR007087Zinc finger, C2H2
PROSITE patternPS000280185208IPR007087Zinc finger, C2H2
SMARTSM0035538214240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQEGNTVLIG SVPGGGPPEK LHQRPFTCPV DDCHSSYRRK DHLTRHMLQH QGKLFECPVE  60
DCKRRFTIQG NMTRHVKEFH SESVDANVKQ PKEYICAEHG CGKVFKYLSK LRAHEDSHVK  120
LDSVEAFCAE PGCMKYFSNE QCLKEHILSC HQYILCDKCG TKQLKKNIKR HMRIHEGVSS  180
ERIKCSIEGC SLTFSTTSNL NQHIKAVHME LKPFKCSIPS CHMKFAFKHV RDNHEKSGCH  240
VYTPGDFVES DEQFRSRPRG GRKRKYPVIE TLMRKRIVPP SESDLVMNQG DEYPSWIHSA  300
ESVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A5e-142321040190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D5e-142321040190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256264RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.10.0transcription factor IIIA
SwissprotQ84MZ41e-108TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G9HUD01e-162A0A2G9HUD0_9LAMI; Uncharacterized protein
STRINGMigut.K00168.1.p1e-158(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-112transcription factor IIIA