PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079246.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 258aa    MW: 29846.3 Da    PI: 8.5898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.8e-05934123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                    ++Cp  dC+++F+ + n++rH +  H
  XP_011079246.1  9 FECPveDCKRRFTIQGNMTRHVKEfH 34
                    89********************9988 PP
2zf-C2H217.11.5e-054872123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    y C    Cgk+F+  s L+ H  +H
  XP_011079246.1 48 YICAehGCGKVFKYLSKLRAHEDSH 72
                    789899***************9888 PP
3zf-C2H218.74.7e-06138162223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ +Fs+ snL++Hi+  H
  XP_011079246.1 138 KCSieGCSLTFSTTSNLNQHIKAvH 162
                     789999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-6735No hitNo description
Gene3DG3DSA:3.30.160.606.4E-6735IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0097934IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346939IPR007087Zinc finger, C2H2
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-74372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.71E-54572No hitNo description
SMARTSM003550.0364872IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3884877IPR007087Zinc finger, C2H2
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
SMARTSM003555.880105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082105IPR007087Zinc finger, C2H2
SMARTSM0035521108129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-9119159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.36E-10119173No hitNo description
SMARTSM003550.0017137162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.593137167IPR007087Zinc finger, C2H2
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
SMARTSM0035538168194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLQHQGKLFE CPVEDCKRRF TIQGNMTRHV KEFHSESVDA NVKQPKEYIC AEHGCGKVFK  60
YLSKLRAHED SHVKLDSVEA FCAEPGCMKY FSNEQCLKEH ILSCHQYILC DKCGTKQLKK  120
NIKRHMRIHE GVSSERIKCS IEGCSLTFST TSNLNQHIKA VHMELKPFKC SIPSCHMKFA  180
FKHVRDNHEK SGCHVYTPGD FVESDEQFRS RPRGGRKRKY PVIETLMRKR IVPPSESDLV  240
MNQGDEYPSW IHSAESVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210218RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.10.0transcription factor IIIA
SwissprotQ84MZ42e-85TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G9HUD01e-163A0A2G9HUD0_9LAMI; Uncharacterized protein
STRINGMigut.K00168.1.p1e-140(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-97transcription factor IIIA