PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079624.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 251aa    MW: 28170.4 Da    PI: 8.0326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1971119355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a+++ ++k++g
  XP_011079624.1  71 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDREARKIRG 119
                     9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-3870133IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2270128IPR016177DNA-binding domain
PROSITE profilePS5103223.74970127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3270128IPR001471AP2/ERF domain
CDDcd000181.72E-3271128No hitNo description
PRINTSPR003671.3E-117182IPR001471AP2/ERF domain
PfamPF008473.5E-1271119IPR001471AP2/ERF domain
PRINTSPR003671.3E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAILAGL IPRRRVSSTD LCPTSADFWP TAFSCSNDQN STPPLKRPRP STGDEPAEKP  60
VAKKKQRKNL YRGIRQRPWG KWAAEIRDPR KGVRVWLGTY NTAEEAARAY DREARKIRGK  120
KAKVNFPNED VDYSYSYNAN PGKPYNIGHS YSEFNQAGLE NELYSAHNAG EVKHHDLNGN  180
GKNSTKAVIE FEVPPEADNE VQKLSEELMA YENYMKFYQI PYLDGQSPAA PTNPPPETVE  240
LWSFDEVSGG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-21711291574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079624.10.0ethylene-responsive transcription factor ERF071
TrEMBLA0A2G9I3231e-121A0A2G9I323_9LAMI; Uncharacterized protein
STRINGMigut.D00130.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-40ERF family protein