PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079712.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YB
Protein Properties Length: 169aa    MW: 19255.5 Da    PI: 7.3423
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.42.1e-5335130297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nak+sk+aket+qecvsefisfvt+eas+kc++ekrkt+ngdd++wal++lGf+dy+e+lk yl +yre+ege
  XP_011079712.1  35 KEQDRLLPIANVGRIMKQILPPNAKVSKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICWALGNLGFDDYAESLKRYLIRYREAEGE 129
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  XP_011079712.1 130 R 130
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-5332151IPR009072Histone-fold
SuperFamilySSF471131.95E-4037153IPR009072Histone-fold
PfamPF008085.3E-2840104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.4E-186886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.4E-1887105No hitNo description
PRINTSPR006156.4E-18106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVDNIGPKNS SSHKDRGFKY CCNDYAEEET SGLIKEQDRL LPIANVGRIM KQILPPNAKV  60
SKEAKETMQE CVSEFISFVT GEASEKCHKE KRKTVNGDDI CWALGNLGFD DYAESLKRYL  120
IRYREAEGER ANQNKTGAGP EENQTEERQQ RGPNSPPPFS FHLREKRRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4434125192Transcription factor HapC (Eurofung)
4g92_B3e-4434125192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079712.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079712.11e-125nuclear transcription factor Y subunit B-5-like
SwissprotO822488e-62NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLF6HPZ62e-68F6HPZ6_VITVI; Uncharacterized protein
STRINGVIT_07s0104g01640.t013e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-64nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]