PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079734.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 371aa    MW: 41370.3 Da    PI: 5.2006
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.6e-081758439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r C+ ++e ++ l+C+ ++  lC +C  e H+       H++
  XP_011079734.1 17 RLCDFCNESKALLYCRADSARLCFNCDREVHSTnplfkkHNR 58
                    78******99*********************66777777776 PP
2zf-B_box23.51.2e-0759102342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                        C+ +++ + ++fC + +  lC++C  e H++    H+++p+
  XP_011079734.1  59 SLLCDSCNSSPSSIFCCSESAVLCQNCDWENHNNfksiHDRRPI 102
                     568*****************************99999**99886 PP
3CCT61.82.2e-21327369143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     R+ a++RYkeKrktR+++K+irYesRK++AesR R+KGrF+k 
  XP_011079734.1 327 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFAKM 369
                     899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-141461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.481461IPR000315B-box-type zinc finger
PfamPF006431.8E-61758IPR000315B-box-type zinc finger
CDDcd000216.38E-81761No hitNo description
PROSITE profilePS5011910.65157102IPR000315B-box-type zinc finger
CDDcd000218.63E-761102No hitNo description
SMARTSM003360.1962102IPR000315B-box-type zinc finger
PROSITE profilePS5101714.872327369IPR010402CCT domain
PfamPF062031.6E-16327369IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSVADQENYD FGDRGGRLCD FCNESKALLY CRADSARLCF NCDREVHSTN PLFKKHNRSL  60
LCDSCNSSPS SIFCCSESAV LCQNCDWENH NNFKSIHDRR PIEGFNGCPS VSELLNFLGL  120
EDLGKKSLVF GGGNDEGFLD LLVWETPAVV SLDDLIVSNN SVDSGLSFQA MGVPPLPKNR  180
NAACGKHKEE ILCQLREMAK AEPNFDGSMQ ELDPVEFQSL VPGKCQLRDI SPGPESNAEP  240
ISVPSYETST LNWFDFTGGV EDKGFPSTFV GSFNEMNHLV PDKDSDVGDC TGIANGLQEV  300
QSSIPVDSKS FQGLPISGVR ELNTQERDSA ISRYKEKRKT RRYDKHIRYE SRKVRAESRT  360
RIKGRFAKMD R
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079734.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079734.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2G9H1M30.0A0A2G9H1M3_9LAMI; Uncharacterized protein
STRINGMigut.D00173.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-85B-box type zinc finger protein with CCT domain