PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011079827.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 258aa MW: 29175.1 Da PI: 6.0387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011079827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	116	163	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+++ +++r RR ri ++++ L+el+P++ k + a L ++++++++L XP_011079827.1 116 REKAYAADRCRRLRISHWLDALQELVPHS-----KEVGRAGLLDEVIDHVQYL 163 888999**********************9.....6699999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-9	111	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.55E-6	112	164	No hit	No description
SuperFamily	SSF47459	1.19E-9	113	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.915	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-5	116	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	120	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MNPGSNWIHP EPVPVPEWMH CPQTPQNYVD FLAERGYTEI QKQMSYDISS QVPSSRLADP 60 SHLEEYLRPH SEGNFIITCV QKQGWTEDCS SAFQAYSSSC AAESKYASGA RRKRSREKAY 120 AADRCRRLRI SHWLDALQEL VPHSKEVGRA GLLDEVIDHV QYLKYKVKDL CRSRLGGEST 180 SNSFIFLEGH GHYLVQEQML NGPLEEIMGK FIDVYPSAAT ELLQSRGLIV MPVNLVEGLC 240 DPMETLDIQE KGAVLISK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011079827.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079827.1	0.0	transcription factor bHLH66-like isoform X5
TrEMBL	A0A0H3Y7N0	1e-100	A0A0H3Y7N0_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D00274.1.p	1e-111	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-21	LJRHL1-like 1