PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080229.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 132aa    MW: 14097.5 Da    PI: 8.6534
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.7e-1794126133
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                     C+ Cg+ +TplWR+gpdg+ tLCnaCGl+++++
  XP_011080229.1  94 CRECGVVSTPLWRKGPDGPQTLCNACGLRHART 126
                     *****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.7E-1386127No hitNo description
PROSITE profilePS5011413.41588123IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-788131IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-1692127IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.04E-1293123No hitNo description
PfamPF003201.5E-1494127IPR000679Zinc finger, GATA-type
PROSITE patternPS00344094119IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDRKSQTGAP SNDDRAAKVD LTLRLGVPGY DSQPPEEKGN TGEAGGSSSA HRTNEAGGTA  60
YAHDPPNIAF YQGIVPQNRA AARRRHNTDD DKVCRECGVV STPLWRKGPD GPQTLCNACG  120
LRHARTAKRS AD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080229.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080229.13e-94GATA transcription factor 15-like
TrEMBLA0A2G9HNF51e-27A0A2G9HNF5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1667355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-12GATA transcription factor 16