PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080257.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Dof
Protein Properties Length: 236aa    MW: 24637.6 Da    PI: 6.1004
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.24.7e-402281362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    +++lkcprCdst+tkfCyynny+lsqPr+fCk+CrryWtkGG+lrn+PvGgg+rkn k+ 
  XP_011080257.1 22 HEQLKCPRCDSTDTKFCYYNNYNLSQPRHFCKSCRRYWTKGGTLRNIPVGGGSRKNAKRG 81
                    6899****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-251270IPR003851Zinc finger, Dof-type
PfamPF027011.1E-332379IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3392579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQNSSFYSQI NAQAQQPQFP EHEQLKCPRC DSTDTKFCYY NNYNLSQPRH FCKSCRRYWT  60
KGGTLRNIPV GGGSRKNAKR GSSSSSAAAK RPAASASASV SVSAPNNSKN DSGNNGGEMI  120
ETSPLKGDDF GGQLGNFVEV SGSFSSLLLA SGGGHFSNLL DGLSPSGSGL EHFGDRGSGQ  180
NVGPQVGLDL ESGGSSNADE FLNIQSGGGG DDDGGWGGSS NAWPDLAIYT PSSNFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080257.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-32AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080257.11e-171dof zinc finger protein DOF3.1-like
SwissprotO821552e-40DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A2G9GGT24e-83A0A2G9GGT2_9LAMI; Uncharacterized protein
STRINGMigut.I01007.1.p1e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-34DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]