PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011080402.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HB-other

Protein Properties

Length: 543aa MW: 61179.9 Da PI: 8.3569

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011080402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.6e-20	42	97	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+++Le+++++++yp+++++ +LA+++gLte+qV+ WF+ rR k+k+ XP_011080402.1 42 KKRTVKTRAQVQALEAFYNEHKYPTESMKIQLAESIGLTEKQVSGWFCHRRLKDKR 97 8*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-22	25	97	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	38	98	IPR001356	Homeobox domain
SMART	SM00389	1.1E-20	40	102	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-18	40	100	IPR009057	Homeodomain-like
CDD	cd00086	1.00E-17	42	97	No hit	No description
Pfam	PF00046	2.9E-17	42	97	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MKFGVFFFPF FRWFNFLIFD RNAVESGEMH SEDDKALLEK NKKRTVKTRA QVQALEAFYN 60 EHKYPTESMK IQLAESIGLT EKQVSGWFCH RRLKDKRLMN GDNYVTGKQD RSSGVIQDRG 120 SGLRQDSCGS TKQGDDRNFD TKEVESGRLT LQEYSAAELT FEHGGHCSGN HNRMDDASSG 180 SSPSLRNMSN HHKDDHFDVA TSRYLIPKFP RDVTGVKTRS GPSGYLKVKG LVENSAITAV 240 KRQLGKHYQE DGPPLGIEFD PLPPGAFESL MQDPVDETCY TEEAVRPASP DASKIRQLPK 300 FGKGCEYNSS VASRSSNMDR TGFKVPQGPD FPDTYVHQKY KQNTNLSPNG AYYPWRSSSE 360 ELPKVSGREI SGSESKDEYG VRYRQAQSVE VMRMSSVSSN CHQQHFGGKS RGDEETSFHR 420 YIDMCRKSSP GEKLADGSSN LAVKGFEYHN YFDKMQPRQQ IAKDGKTCAQ RRIINENMVN 480 ISGKNSSAAP KRMRNEFPQQ PLLKRSSAID NQLETYRVIR SAAEMPSSYS EDEGSAETSS 540 SVE

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MKFGVFFFPF FRWFNFLIFD RNAVESGEMH SEDDKALLEK NKKRTVKTRA QVQALEAFYN  60
EHKYPTESMK IQLAESIGLT EKQVSGWFCH RRLKDKRLMN GDNYVTGKQD RSSGVIQDRG  120
SGLRQDSCGS TKQGDDRNFD TKEVESGRLT LQEYSAAELT FEHGGHCSGN HNRMDDASSG  180
SSPSLRNMSN HHKDDHFDVA TSRYLIPKFP RDVTGVKTRS GPSGYLKVKG LVENSAITAV  240
KRQLGKHYQE DGPPLGIEFD PLPPGAFESL MQDPVDETCY TEEAVRPASP DASKIRQLPK  300
FGKGCEYNSS VASRSSNMDR TGFKVPQGPD FPDTYVHQKY KQNTNLSPNG AYYPWRSSSE  360
ELPKVSGREI SGSESKDEYG VRYRQAQSVE VMRMSSVSSN CHQQHFGGKS RGDEETSFHR  420
YIDMCRKSSP GEKLADGSSN LAVKGFEYHN YFDKMQPRQQ IAKDGKTCAQ RRIINENMVN  480
ISGKNSSAAP KRMRNEFPQQ PLLKRSSAID NQLETYRVIR SAAEMPSSYS EDEGSAETSS  540
SVE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011080402.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	0.0	uncharacterized protein LOC105163662 isoform X3
TrEMBL	A0A2G9HIP9	0.0	A0A2G9HIP9_9LAMI; Transcription factor HEX
STRING	Migut.N02368.1.p	1e-179	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-79	HB-other family protein