PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011080404.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HB-other

Protein Properties

Length: 515aa MW: 57701.9 Da PI: 8.3575

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011080404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.9e-20	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+++Le+++++++yp+++++ +LA+++gLte+qV+ WF+ rR k+k+ XP_011080404.1 14 KKRTVKTRAQVQALEAFYNEHKYPTESMKIQLAESIGLTEKQVSGWFCHRRLKDKR 69 8*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-21	2	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	10	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.91E-18	12	72	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-20	12	74	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-17	14	69	IPR001356	Homeobox domain
CDD	cd00086	8.89E-18	14	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MHSEDDKALL EKNKKRTVKT RAQVQALEAF YNEHKYPTES MKIQLAESIG LTEKQVSGWF 60 CHRRLKDKRL MNGDNYVTGK QDRSSGVIQD RGSGLRQDSC GSTKQGDDRN FDTKEVESGR 120 LTLQEYSAAE LTFEHGGHCS GNHNRMDDAS SGSSPSLRNM SNHHKDDHFD VATSRYLIPK 180 FPRDVTGVKT RSGPSGYLKV KGLVENSAIT AVKRQLGKHY QEDGPPLGIE FDPLPPGAFE 240 SLMQDPVDET CYTEEAVRPA SPDASKIRQL PKFGKGCEYN SSVASRSSNM DRTGFKVPQG 300 PDFPDTYVHQ KYKQNTNLSP NGAYYPWRSS SEELPKVSGR EISGSESKDE YGVRYRQAQS 360 VEVMRMSSVS SNCHQQHFGG KSRGDEETSF HRYIDMCRKS SPGEKLADGS SNLAVKGFEY 420 HNYFDKMQPR QQIAKDGKTC AQRRIINENM VNISGKNSSA APKRMRNEFP QQPLLKRSSA 480 IDNQLETYRV IRSAAEMPSS YSEDEGSAET SSSVE

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MHSEDDKALL EKNKKRTVKT RAQVQALEAF YNEHKYPTES MKIQLAESIG LTEKQVSGWF  60
CHRRLKDKRL MNGDNYVTGK QDRSSGVIQD RGSGLRQDSC GSTKQGDDRN FDTKEVESGR  120
LTLQEYSAAE LTFEHGGHCS GNHNRMDDAS SGSSPSLRNM SNHHKDDHFD VATSRYLIPK  180
FPRDVTGVKT RSGPSGYLKV KGLVENSAIT AVKRQLGKHY QEDGPPLGIE FDPLPPGAFE  240
SLMQDPVDET CYTEEAVRPA SPDASKIRQL PKFGKGCEYN SSVASRSSNM DRTGFKVPQG  300
PDFPDTYVHQ KYKQNTNLSP NGAYYPWRSS SEELPKVSGR EISGSESKDE YGVRYRQAQS  360
VEVMRMSSVS SNCHQQHFGG KSRGDEETSF HRYIDMCRKS SPGEKLADGS SNLAVKGFEY  420
HNYFDKMQPR QQIAKDGKTC AQRRIINENM VNISGKNSSA APKRMRNEFP QQPLLKRSSA  480
IDNQLETYRV IRSAAEMPSS YSEDEGSAET SSSVE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011080404.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	0.0	uncharacterized protein LOC105163662 isoform X3
TrEMBL	A0A2G9HIP9	0.0	A0A2G9HIP9_9LAMI; Transcription factor HEX
STRING	Migut.N02368.1.p	1e-179	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-77	HB-other family protein